Cy3-4040B Filter Set - Fluorophores
Table of fluorophores that may be used with the Cy3-4040B filter set: The set is optimized or use with the fluorophores highlighted in bold. Note that results may vary depending upon instrumentation and conditions.
| Fluorophore | Peak Excitation Wavelength* (nm) | Peak Emission Wavelength* (nm ) |
| Alexa Fluor 555™ | 555 | 565 |
| BOBO™-3 | 570 | 602 |
| BODIPY 558/568 | 558 | 569 |
| BODIPY 564/570 | 564 | 570 |
| CAL Fluor Red 590 | 569 | 591 |
| Calcium Orange | 549 | 575 |
| Carboxy SNARF Indicators | 548 | 587 |
| CoralHue Kusabira Orange (mKO) | 548 | 559 |
| Cy3™ | 552 | 570 |
| DsRed Monomer | 556 | 586 |
| DsRed-Express | 557 | 579 |
| DsRed2 | 563 | 582 |
| dTomato | 554 | 581 |
| DyLight 549 | 553 | 569 |
| Ethidium Homodimer-1 (EthD-1) | 528 | 617 |
| Fluor-Ruby | 555 | 582 |
| Haematoporphyrin | 545 | 580 |
| Lissamine Rhodamine | 572 | 591 |
| LO-PRO-1 | 568 | 581 |
| LOLO-1 | 566 | 580 |
| LysoTracker Red | 577 | 592 |
| LysoTracker Yellow | 551 | 576 |
| Mag-Fura Red | 483 | 659 |
| Magdala Red (Phloxin B) | 524 | 600 |
| Magnesium Orange | 550 | 575 |
| Merocyanin | 555 | 578 |
| MitoTracker™ Orange | 551 | 576 |
| mOrange | 548 | 568 |
| mStrawberry | 575 | 596 |
| mTangerine | 568 | 585 |
| OFP | 547 | 567 |
| Phloxin B (Magdala Red) | 524 | 600 |
| Phycoerythrin (PE) | 565 | 575 |
| PKH26 | 559 | 575 |
| Pontochrome Blue Black | 545 | 605 |
| Pyronine B | 565 | 605 |
| Quasar 570 | 547 | 570 |
| R-phycoerythrin (PE) | 565 | 575 |
| Resorufin | 571 | 585 |
| Rhodamine B | 540 | 625 |
| Rhodamine B 200 | 540 | 595 |
| Rhodamine Phallicidine | 558 | 575 |
| Rhodamine Red | 560 | 580 |
| ROX | 568 | 595 |
| SNARF (carboxy) 488 Excitation pH6 | 549 | 589 |
| SNARF (carboxy) 514 Excitation pH6 | 549 | 586 |
| SpectrumOrange | 559 | 588 |
| SYTO Orange Fluorescent Nucleic Acid Stains 84,85 | 567 | 583 |
| TAMRA | 565 | 580 |
| Tetramethylrhodamine, Rhodamine B | 555 | 580 |
| X-Rhodamine | 570 | 576 |
* These are typical wavelengths to be used for guidance purposes only. Actual peak wavelengths may vary for different applications.